Get Pathway

Retrieve a specific pathway in the GPML format

getPathway(pathway, revision = 0)

Arguments

pathway	WikiPathways identifier (WPID) for the pathway to download, e.g. WP4
revision	(integer, optional) Number to indicate a specific revision to download

Value

GPML

Examples

{
getPathway('WP554')
}
#> [[1]]
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Ang II activates the angiotensin II receptor type 1 to induce aldosterone synthesis, increasing water and salt resorption and potassium excretion in the kidney and increasing blood pressure.\n\nSource: PharmGKB (https://www.pharmgkb.org/pathway/PA2023)\n\nProteins on this pathway have targeted assays available via the [https://assays.cancer.gov/available_assays?wp_id=WP554 CPTAC Assay Portal]</Comment>\n  <BiopaxRef>b93</BiopaxRef>\n  <Graphics BoardWidth=\"991.0\" BoardHeight=\"651.0\" />\n  <DataNode TextLabel=\"NOS3\" GraphId=\"ab119\" Type=\"GeneProduct\">\n    <Attribute Key=\"org.pathvisio.model.BackpageHead\" Value=\"NOS3 | nitric oxide synthase 3 (endothelial cel...\" />\n    <Graphics CenterX=\"759.0\" CenterY=\"512.3333333333333\" Width=\"60.0\" Height=\"20.0\" ZOrder=\"32768\" FontSize=\"10\" Valign=\"Middle\" />\n    <Xref Database=\"Entrez Gene\" ID=\"4846\" />\n  </DataNode>\n  <DataNode TextLabel=\"AGTR2\" GraphId=\"b1122\" Type=\"GeneProduct\">\n    <BiopaxRef>bc9</BiopaxRef>\n    <Attribute Key=\"org.pathvisio.model.BackpageHead\" Value=\"AGTR2 | angiotensin II receptor type 2\" />\n    <Graphics CenterX=\"351.3333333333333\" CenterY=\"390.3333333333333\" Width=\"60.0\" Height=\"20.0\" ZOrder=\"32768\" FontSize=\"10\" Valign=\"Middle\" />\n    <Xref Database=\"Entrez Gene\" ID=\"186\" />\n  </DataNode>\n  <DataNode TextLabel=\"Ang 1-5\" GraphId=\"b298c\" Type=\"Metabolite\">\n    <Graphics CenterX=\"102.0\" CenterY=\"326.0\" Width=\"54.0\" Height=\"20.0\" ZOrder=\"32768\" FontSize=\"10\" Valign=\"Middle\" Color=\"0000ff\" />\n    <Xref Database=\"KEGG Compound\" ID=\"C15852\" />\n  </DataNode>\n  <DataNode TextLabel=\"BDKRB1\" GraphId=\"b4349\" Type=\"GeneProduct\">\n    <Graphics CenterX=\"681.5\" CenterY=\"388.0\" Width=\"57.0\" Height=\"20.0\" ZOrder=\"32768\" FontSize=\"10\" Valign=\"Middle\" />\n    <Xref Database=\"Entrez Gene\" ID=\"623\" />\n  </DataNode>\n  <DataNode TextLabel=\"TFs\" GraphId=\"b47da\" 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#>