Get Pathways by Parent Ontology Term

Retrieve pathway information for every pathway with a child term of given ontology term.

getPathwaysByParentOntologyTerm(term)

Arguments

term	(character) Official name of ontology term, e.g., "PW:0000045"

Value

A list of pathway information, including WPID, url, name, species and revision

Examples

{
getPathwaysByParentOntologyTerm('PW:0000045')
}
#> [[1]]
#> [[1]]$id
#> [1] "WP134"
#> 
#> [[1]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP134"
#> 
#> [[1]]$name
#> [1] "Pentose Phosphate Metabolism"
#> 
#> [[1]]$species
#> [1] "Homo sapiens"
#> 
#> [[1]]$revision
#> [1] "114260"
#> 
#> 
#> [[2]]
#> [[2]]$id
#> [1] "WP379"
#> 
#> [[2]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP379"
#> 
#> [[2]]$name
#> [1] "Non-Oxidative Branch of the Pentose Pathway"
#> 
#> [[2]]$species
#> [1] "Saccharomyces cerevisiae"
#> 
#> [[2]]$revision
#> [1] "96418"
#> 
#> 
#> [[3]]
#> [[3]]$id
#> [1] "WP417"
#> 
#> [[3]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP417"
#> 
#> [[3]]$name
#> [1] ""
#> 
#> [[3]]$species
#> [1] ""
#> 
#> [[3]]$revision
#> [1] 0
#> 
#> 
#> [[4]]
#> [[4]]$id
#> [1] "WP122"
#> 
#> [[4]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP122"
#> 
#> [[4]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[4]]$species
#> [1] "Danio rerio"
#> 
#> [[4]]$revision
#> [1] "82860"
#> 
#> 
#> [[5]]
#> [[5]]$id
#> [1] "WP134"
#> 
#> [[5]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP134"
#> 
#> [[5]]$name
#> [1] "Pentose Phosphate Metabolism"
#> 
#> [[5]]$species
#> [1] "Homo sapiens"
#> 
#> [[5]]$revision
#> [1] "114260"
#> 
#> 
#> [[6]]
#> [[6]]$id
#> [1] "WP282"
#> 
#> [[6]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP282"
#> 
#> [[6]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[6]]$species
#> [1] "Rattus norvegicus"
#> 
#> [[6]]$revision
#> [1] "113975"
#> 
#> 
#> [[7]]
#> [[7]]$id
#> [1] "WP312"
#> 
#> [[7]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP312"
#> 
#> [[7]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[7]]$species
#> [1] "Caenorhabditis elegans"
#> 
#> [[7]]$revision
#> [1] "68457"
#> 
#> 
#> [[8]]
#> [[8]]$id
#> [1] "WP369"
#> 
#> [[8]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP369"
#> 
#> [[8]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[8]]$species
#> [1] "Saccharomyces cerevisiae"
#> 
#> [[8]]$revision
#> [1] "96415"
#> 
#> 
#> [[9]]
#> [[9]]$id
#> [1] "WP421"
#> 
#> [[9]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP421"
#> 
#> [[9]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[9]]$species
#> [1] "Drosophila melanogaster"
#> 
#> [[9]]$revision
#> [1] "111041"
#> 
#> 
#> [[10]]
#> [[10]]$id
#> [1] "WP63"
#> 
#> [[10]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP63"
#> 
#> [[10]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[10]]$species
#> [1] "Mus musculus"
#> 
#> [[10]]$revision
#> [1] "111179"
#> 
#> 
#> [[11]]
#> [[11]]$id
#> [1] "WP670"
#> 
#> [[11]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP670"
#> 
#> [[11]]$name
#> [1] "Pentose Phosphate Pathway 2"
#> 
#> [[11]]$species
#> [1] "Saccharomyces cerevisiae"
#> 
#> [[11]]$revision
#> [1] "107029"
#> 
#> 
#> [[12]]
#> [[12]]$id
#> [1] "WP1147"
#> 
#> [[12]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP1147"
#> 
#> [[12]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[12]]$species
#> [1] "Canis familiaris"
#> 
#> [[12]]$revision
#> [1] "106050"
#> 
#> 
#> [[13]]
#> [[13]]$id
#> [1] "WP1231"
#> 
#> [[13]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP1231"
#> 
#> [[13]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[13]]$species
#> [1] "Anopheles gambiae"
#> 
#> [[13]]$revision
#> [1] "105893"
#> 
#> 
#> [[14]]
#> [[14]]$id
#> [1] "WP1684"
#> 
#> [[14]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP1684"
#> 
#> [[14]]$name
#> [1] ""
#> 
#> [[14]]$species
#> [1] ""
#> 
#> [[14]]$revision
#> [1] 0
#> 
#> 
#> [[15]]
#> [[15]]$id
#> [1] "WP797"
#> 
#> [[15]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP797"
#> 
#> [[15]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[15]]$species
#> [1] "Gallus gallus"
#> 
#> [[15]]$revision
#> [1] "109463"
#> 
#> 
#> [[16]]
#> [[16]]$id
#> [1] "WP911"
#> 
#> [[16]]$url
#> [1] "https://www.wikipathways.org/index.php/Pathway:WP911"
#> 
#> [[16]]$name
#> [1] "Pentose Phosphate Pathway"
#> 
#> [[16]]$species
#> [1] "Pan troglodytes"
#> 
#> [[16]]$revision
#> [1] "106933"
#> 
#>