List Pathways

Retrieve list of pathways per species, including WPID, name, species, URL and latest revision number.

listPathways(organism = "")

Arguments

organism	(character, optional) A particular species. See listOrganisms. Default is all species.

Value

A dataframe of pathway information

Examples

{
listPathways('Mus musculus')
}
#>         id                                                  url
#>   1:   WP1   https://www.wikipathways.org/index.php/Pathway:WP1
#>   2:  WP10  https://www.wikipathways.org/index.php/Pathway:WP10
#>   3: WP103 https://www.wikipathways.org/index.php/Pathway:WP103
#>   4: WP108 https://www.wikipathways.org/index.php/Pathway:WP108
#>   5: WP113 https://www.wikipathways.org/index.php/Pathway:WP113
#>  ---                                                           
#> 229:  WP79  https://www.wikipathways.org/index.php/Pathway:WP79
#> 230:  WP85  https://www.wikipathways.org/index.php/Pathway:WP85
#> 231:  WP87  https://www.wikipathways.org/index.php/Pathway:WP87
#> 232:  WP88  https://www.wikipathways.org/index.php/Pathway:WP88
#> 233:  WP93  https://www.wikipathways.org/index.php/Pathway:WP93
#>                                    name      species revision
#>   1:                     Statin Pathway Mus musculus   107192
#>   2:             IL-9 Signaling Pathway Mus musculus    97840
#>   3:           Cholesterol Biosynthesis Mus musculus   107713
#>   4: Selenium metabolism/Selenoproteins Mus musculus   114024
#>   5:         TGF Beta Signaling Pathway Mus musculus   114016
#>  ---                                                         
#> 229:              Tryptophan metabolism Mus musculus   104913
#> 230:                     Focal Adhesion Mus musculus   114017
#> 231:              Nucleotide Metabolism Mus musculus   107214
#> 232:       Toll Like Receptor signaling Mus musculus    80116
#> 233:             IL-4 signaling Pathway Mus musculus    71761