WikiPathways GET

Constructs the query, makes GET call and processes the result

wikipathwaysGET(
  operation,
  parameters = NULL,
  format = c("json", "xml", "html", "jpg", "pdf", "dump"),
  base.url = .baseUrl
)

Arguments

operation	A character string to be converted to the query namespace
parameters	A named list of values to be converted to query parameters
format	(character) The format of the return, e.g., json (default), xml, html, jpg, pdf, dump
base.url	(optional) Ignore unless you need to specify a custom domain.

Value

query result content

Examples

{
wikipathwaysGET('listOrganisms')
}
#> $organisms
#>  [1] "Unspecified"                "Acetobacterium woodii"     
#>  [3] "Anopheles gambiae"          "Arabidopsis thaliana"      
#>  [5] "Bacillus subtilis"          "Beta vulgaris"             
#>  [7] "Bos taurus"                 "Caenorhabditis elegans"    
#>  [9] "Canis familiaris"           "Clostridium thermocellum"  
#> [11] "Danio rerio"                "Daphnia magna"             
#> [13] "Daphnia pulex"              "Drosophila melanogaster"   
#> [15] "Escherichia coli"           "Equus caballus"            
#> [17] "Gallus gallus"              "Glycine max"               
#> [19] "Gibberella zeae"            "Homo sapiens"              
#> [21] "Hordeum vulgare"            "Mus musculus"              
#> [23] "Mycobacterium tuberculosis" "Oryza sativa"              
#> [25] "Pan troglodytes"            "Populus trichocarpa"       
#> [27] "Rattus norvegicus"          "Saccharomyces cerevisiae"  
#> [29] "Solanum lycopersicum"       "Sus scrofa"                
#> [31] "Vitis vinifera"             "Xenopus tropicalis"        
#> [33] "Zea mays"                   "Plasmodium falciparum"     
#> [35] "Brassica napus"            
#>