Retrieve list of pathway names per species.
listPathwayNames(organism = "")
| organism | ( |
|---|
A list of names
Basically returns a subset of listPathways result
listPathways
{ listPathwayNames('Mus musculus') }#> [1] "Statin Pathway" #> [2] "IL-9 Signaling Pathway" #> [3] "Cholesterol Biosynthesis" #> [4] "Selenium metabolism/Selenoproteins" #> [5] "TGF Beta Signaling Pathway" #> [6] "Hedgehog Signaling Pathway" #> [7] "Glucuronidation" #> [8] "Non-homologous end joining" #> [9] "EBV LMP1 signaling" #> [10] "Estrogen signaling" #> [11] "Keap1-Nrf2" #> [12] "Hypothetical Network for Drug Addiction" #> [13] "Methylation" #> [14] "Oxidative phosphorylation" #> [15] "EPO Receptor Signaling" #> [16] "Arachidonate Epoxygenase Epoxide Hydrolase" #> [17] "Metapathway biotransformation" #> [18] "Amino acid conjugation of benzoic acid" #> [19] "Type II interferon signaling (IFNG)" #> [20] "Apoptosis" #> [21] "NLR Proteins" #> [22] "Mismatch repair" #> [23] "Homologous recombination" #> [24] "Retinol metabolism" #> [25] "ErbB signaling pathway" #> [26] "Aflatoxin B1 metabolism" #> [27] "Mitochondrial Gene Expression" #> [28] "Estrogen metabolism" #> [29] "Polyol pathway" #> [30] "SIDS Susceptibility Pathways" #> [31] "Fatty Acid Beta Oxidation" #> [32] "Endochondral Ossification" #> [33] "Toll-like receptor signaling pathway" #> [34] "Selenium Micronutrient Network" #> [35] "Folic Acid Network" #> [36] "Oxidation by Cytochrome P450" #> [37] "Non-odorant GPCRs" #> [38] "Odorant GPCRs" #> [39] "Orphan GPCRs" #> [40] "Oxidative Damage" #> [41] "Dopaminergic Neurogenesis" #> [42] "DNA Replication" #> [43] "SHH, FGF8, Stat3" #> [44] "IL-5 Signaling Pathway" #> [45] "Regulation of Cardiac Hypertrophy by miR-208" #> [46] "MicroRNAs in Cardiomyocyte Hypertrophy" #> [47] "Glycolysis and Gluconeogenesis" #> [48] "Iron Homeostasis" #> [49] "Cytoplasmic Ribosomal Proteins" #> [50] "Glutathione metabolism" #> [51] "Apoptosis Modulation by HSP70" #> [52] "Acetylcholine Synthesis" #> [53] "PluriNetWork: mechanisms associated with pluripotency" #> [54] "One carbon metabolism and related pathways" #> [55] "Kennedy pathway" #> [56] "Heme Biosynthesis" #> [57] "GPCRs, Class A Rhodopsin-like" #> [58] "Cell cycle" #> [59] "Signaling of Hepatocyte Growth Factor Receptor" #> [60] "Splicing factor NOVA regulated synaptic proteins" #> [61] "Complement Activation, Classical Pathway" #> [62] "Ptf1a related regulatory pathway" #> [63] "Hypertrophy Model" #> [64] "Heart Development" #> [65] "Nucleotide GPCRs" #> [66] "Neural Crest Differentiation" #> [67] "Alzheimers Disease" #> [68] "miRs in Muscle Cell Differentiation" #> [69] "Serotonin Receptor 2 and STAT3 Signaling" #> [70] "SRF and miRs in Smooth Muscle Differentiation and Proliferation" #> [71] "Cell Differentiation - Index" #> [72] "Nicotine Activity on Dopaminergic Neurons" #> [73] "SREBF and miR33 in cholesterol and lipid homeostasis" #> [74] "miRNAs involved in DNA damage response" #> [75] "Serotonin and anxiety-related events" #> [76] "Serotonin and anxiety" #> [77] "BDNF Pathway" #> [78] "Striated Muscle Contraction" #> [79] "S1P pathways and spinal cord injury" #> [80] "Purine metabolism" #> [81] "Cytokines and Inflammatory Response" #> [82] "Macrophage markers" #> [83] "Chemokine signaling pathway" #> [84] "XPodNet - protein-protein interactions in the podocyte expanded by STRING" #> [85] "PodNet: protein-protein interactions in the podocyte" #> [86] "PPAR signaling pathway" #> [87] "Fatty acid oxidation" #> [88] "G Protein Signaling Pathways" #> [89] "Peptide GPCRs" #> [90] "miRNAs and TFs in iPS Cell Generation" #> [91] "Osteoblast" #> [92] "Alanine and aspartate metabolism" #> [93] "Spinal Cord Injury" #> [94] "TNF-alpha NF-kB Signaling Pathway" #> [95] "MAPK Cascade" #> [96] "Androgen Receptor Signaling Pathway" #> [97] "Dantrolene Metabolic Pathway" #> [98] "Primary Focal Segmental Glomerulosclerosis FSGS" #> [99] "TGF-beta Receptor Signaling Pathway" #> [100] "Limb Development" #> [101] "Limb and Fin Development" #> [102] "Delta-Notch Signaling Pathway" #> [103] "Ovarian Infertility Genes" #> [104] "B Cell Receptor Signaling Pathway" #> [105] "Focal Adhesion-PI3K-Akt-mTOR-signaling pathway" #> [106] "Gene regulatory network modelling somitogenesis " #> [107] "White fat cell differentiation" #> [108] "Notch Signaling Pathway" #> [109] "p53 signaling" #> [110] "Mir302-367 Promoting Cardiomyocyte Proliferation" #> [111] "Mecp2 and Associated Rett Syndrome" #> [112] "miR-222 in Exercise-Induced Cardiac Growth" #> [113] "Electron Transport Chain" #> [114] "IL-7 Signaling Pathway" #> [115] "G13 Signaling Pathway" #> [116] "Histone modifications" #> [117] "Translation Factors" #> [118] "mRNA processing" #> [119] "Glycogen Metabolism" #> [120] "Eicosanoid Synthesis" #> [121] "GPCRs, Class C Metabotropic glutamate, pheromone" #> [122] "MAPK signaling pathway" #> [123] "Fatty Acid Omega Oxidation" #> [124] "Fatty Acid Biosynthesis" #> [125] "ESC Pluripotency Pathways" #> [126] "Adar1 editing defficiency immune response" #> [127] "p38 MAPK Signaling Pathway" #> [128] "Small Ligand GPCRs" #> [129] "Glycolysis" #> [130] "TCA Cycle (streamlined)" #> [131] "Fatty Acid Beta Oxidation (streamlined)" #> [132] "ApoE and miR-146 in inflammation and atherosclerosis" #> [133] "TYROBP Causal Network" #> [134] "Microglia Pathogen Phagocytosis Pathway" #> [135] "Lung fibrosis" #> [136] "Parkinsons Disease Pathway" #> [137] "EDA Signalling in Hair Follicle Development" #> [138] "Novel Jun-Dmp1 Pathway" #> [139] "BMP Signaling Pathway in Eyelid Development" #> [140] " Hfe effect on hepcidin production" #> [141] "Factors and pathways affecting insulin-like growth factor (IGF1)-Akt signaling" #> [142] "IL-1 Signaling Pathway" #> [143] "IL-3 Signaling Pathway" #> [144] "Prostaglandin Synthesis and Regulation" #> [145] "Myometrial Relaxation and Contraction Pathways" #> [146] "Dysregulated miRNA Targeting in Insulin/PI3K-AKT Signaling" #> [147] "Wnt Signaling in Kidney Disease" #> [148] "Triacylglyceride Synthesis" #> [149] "Robo4 and VEGF Signaling Pathways Crosstalk" #> [150] "IL-6 signaling Pathway" #> [151] "ACE Inhibitor Pathway" #> [152] "mir-193a and MVP in colon cancer metastasis" #> [153] "miR-127 in mesendoderm differentiation" #> [154] "Mitochondrial LC-Fatty Acid Beta-Oxidation" #> [155] "Wnt Signaling Pathway" #> [156] "Kit Receptor Signaling Pathway" #> [157] "GPCRs, Other" #> [158] "Oxidative Stress" #> [159] "G1 to S cell cycle control" #> [160] "Distal Convoluted Tubule 1 (DCT1) Cell" #> [161] "Mechanism of Neuromodulatory Action of Exogenous Oxytocin and Antagonist by GABAergic Transmission" #> [162] "Urea cycle and metabolism of amino groups" #> [163] "Ethanol metabolism resulting in production of ROS by CYP2E1" #> [164] "Nuclear receptors in lipid metabolism and toxicity" #> [165] "Eicosanoid Lipid Synthesis Map" #> [166] "TCA Cycle" #> [167] "Sphingolipid Metabolism (general overview)" #> [168] "Glycerolipids and Glycerophospholipids" #> [169] "Cholesterol metabolism (includes both Bloch and Kandutsch-Russell pathways)" #> [170] "Eicosanoid metabolism via Cyclo Oxygenases (COX)" #> [171] "Eicosanoid metabolism via Lipo Oxygenases (LOX)" #> [172] "Eicosanoid metabolism via Cytochrome P450 Mono-Oxygenases (CYP) pathway" #> [173] "One Carbon Metabolism" #> [174] "Omega-3/Omega-6 FA synthesis" #> [175] "Omega-9 FA synthesis" #> [176] "PDGFRα and STMN1 cooperate to exacerbate the cytotoxic effects of vinblastine" #> [177] "Matrix Metalloproteinases" #> [178] "Oxidative Stress and Redox Pathway" #> [179] "Adipogenesis genes" #> [180] "Circulating monocytes and cardiac macrophages in diastolic dysfunction" #> [181] "Complement and Coagulation Cascades" #> [182] "Elongation of (very) long chain fatty acids" #> [183] "IL-2 Signaling Pathway" #> [184] "Osteoclast" #> [185] "GPCRs, Class B Secretin-like" #> [186] "Inflammatory Response Pathway" #> [187] "Blood Clotting Cascade" #> [188] " Lipids measured in liver metastasis from breast cancer" #> [189] "Sphingolipid Metabolism (integrated pathway)" #> [190] "Immune response in Tg26 glomeruli" #> [191] "Irinotecan Pathway" #> [192] "Regulation of Pgc1a expression by a Gsk3b-Tfeb signaling axis in skeletal muscle" #> [193] "T Cell Receptor Signaling Pathway" #> [194] "GDNF/RET signalling axis" #> [195] "Peroxiredoxin 2 induced ovarian failure" #> [196] "Alpha6-Beta4 Integrin Signaling Pathway" #> [197] "MAPK signaling pathway" #> [198] "Glucocorticoid and Mineralcorticoid Metabolism" #> [199] "Deregulation of the Renin Angiotensin system by Sars-CoV infection" #> [200] "Hypoxia-Dependent Self-Renewal of Myoblasts" #> [201] "Hypoxia-Dependent Proliferation of Myoblasts" #> [202] "Hypoxia-Dependent Differentiation of Myoblasts" #> [203] "Na/K-ATPase/Src Signaling" #> [204] "Nuclear Receptors" #> [205] "Id Signaling Pathway" #> [206] "Proteasome Degradation" #> [207] "Biogenic Amine Synthesis" #> [208] "Regulation of Actin Cytoskeleton" #> [209] "Neural retinal development" #> [210] "Wnt Signaling Pathway NetPath" #> [211] "Synthesis and Degradation of Ketone Bodies" #> [212] "Exercise-induced Circadian Regulation" #> [213] "Steroid Biosynthesis" #> [214] "Calcium Regulation in the Cardiac Cell" #> [215] "Eukaryotic Transcription Initiation" #> [216] "Signal Transduction of S1P Receptor" #> [217] "Monoamine GPCRs" #> [218] "FAS pathway and Stress induction of HSP regulation" #> [219] "EGFR1 Signaling Pathway" #> [220] "Leptin Insulin Overlap" #> [221] "Integrin-mediated Cell Adhesion" #> [222] "miR-1 in cardiac development" #> [223] "Pentose Phosphate Pathway" #> [224] "Insulin Signaling" #> [225] "Amino Acid metabolism" #> [226] "Leptin and adiponectin" #> [227] "Wnt Signaling Pathway and Pluripotency" #> [228] "Glutathione and one carbon metabolism" #> [229] "Tryptophan metabolism" #> [230] "Focal Adhesion" #> [231] "Nucleotide Metabolism" #> [232] "Toll Like Receptor signaling" #> [233] "IL-4 signaling Pathway"